The second season consists of 13 episodes, it was aired on Sunday, 27 May 2012 at 7:00 pm on TV3. In this season, BoBoiBoy begins a new chapter of his life as he moves to Pulau Rintis to reunite with Tok Aba Bin Abah Kau, Gopal, Ying and Yaya. The story in this season mainly centres on BoBoiBoy and his friends’ life at Pulau Rintis Primary School. BoBoiBoy also encounters a new challenger, Fang at his new school. Fang or Mystery Boy was first introduced in Season 1 on Extended Finale episode. In Season 2 finale BoBoiBoy’s friends along with Fang fight a super-powerful alien named Ejo Jo who takes all the power watches except for Fang and Boboiboy, and to defeat him, Fang uses his full power.
2 - 1Welcome Back, BoBoiBoy! May. 27, 2012- 2 - 2The Haunted House Jun. 03, 2012
- 2 - 3Physical Education Jun. 10, 2012
- 2 - 4Football Fight! Jun. 24, 2012
- 2 - 5Late for School Aug. 26, 2012
- 2 - 6Giant Mini World Sep. 09, 2012
- 2 - 7Emotive Chemical Y Dec. 09, 2012
- 2 - 8Fang and Ochobot's Secret Dec. 16, 2012
- 2 - 9Mornings with Mr. Probe and Adu Du Dec. 23, 2012
- 2 - 10First Contact Dec. 30, 2012
- 2 - 11Pop Quiz Season Mar. 10, 2013
- 2 - 12Ejo Jo Attacks Mar. 17, 2013
- 2 - 13Goodbye, Probe Mar. 24, 2013
